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cobra 0.32.1 documentation
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1. Getting Started
2. Global Configuration
3. Building a Model
4. Reading and Writing Models
5. Simulating with FBA
6. Simulating Deletions
7. Production envelopes
8. Flux sampling
9. Loopless FBA
10. Consistency testing
11. Gapfillling
12. Growth media
13. Solvers
14. Tailored constraints, variables and objectives
15. Dynamic Flux Balance Analysis (dFBA) in COBRApy
16. FAQ
17. API
17.1.1. cobra.core
cobra.core.configuration
cobra.core.dictlist
cobra.core.formula
cobra.core.gene
cobra.core.group
cobra.core.metabolite
cobra.core.model
cobra.core.object
cobra.core.reaction
cobra.core.singleton
cobra.core.solution
cobra.core.species
17.1.2. cobra.data
17.1.3. cobra.exceptions
17.1.4. cobra.flux_analysis
cobra.flux_analysis.deletion
cobra.flux_analysis.fast_snp
cobra.flux_analysis.fastcc
cobra.flux_analysis.find_cyclic_reactions
cobra.flux_analysis.gapfilling
cobra.flux_analysis.geometric
cobra.flux_analysis.helpers
cobra.flux_analysis.loopless
cobra.flux_analysis.moma
cobra.flux_analysis.parsimonious
cobra.flux_analysis.phenotype_phase_plane
cobra.flux_analysis.reaction
cobra.flux_analysis.room
cobra.flux_analysis.variability
17.1.5. cobra.io
cobra.io.dict
cobra.io.json
cobra.io.mat
cobra.io.sbml
cobra.io.web
cobra.io.web.abstract_model_repository
cobra.io.web.bigg_models_repository
cobra.io.web.biomodels_repository
cobra.io.web.cobrapy_repository
cobra.io.web.load
cobra.io.yaml
17.1.6. cobra.manipulation
cobra.manipulation.annotate
cobra.manipulation.delete
cobra.manipulation.modify
cobra.manipulation.validate
17.1.7. cobra.medium
cobra.medium.annotations
cobra.medium.boundary_types
cobra.medium.minimal_medium
17.1.8. cobra.sampling
cobra.sampling.achr
cobra.sampling.core
cobra.sampling.hopsy
cobra.sampling.hr_sampler
cobra.sampling.optgp
cobra.sampling.sampling
17.1.9. cobra.summary
cobra.summary.metabolite_summary
cobra.summary.model_summary
cobra.summary.reaction_summary
cobra.summary.summary
17.1.10. cobra.util
cobra.util.array
cobra.util.context
cobra.util.process_pool
cobra.util.solver
cobra.util.util
.rst
.pdf
System Settings
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cobra.sampling.hopsy
cobra.sampling.hopsy
#
Provide hopsy samplers.