All modules for which code is available
- cobra
- cobra.core
- cobra.core.configuration
- cobra.core.dictlist
- cobra.core.formula
- cobra.core.gene
- cobra.core.group
- cobra.core.metabolite
- cobra.core.model
- cobra.core.object
- cobra.core.reaction
- cobra.core.singleton
- cobra.core.solution
- cobra.core.species
- cobra.core.summary
- cobra.exceptions
- cobra.flux_analysis.deletion
- cobra.flux_analysis.fastcc
- cobra.flux_analysis.gapfilling
- cobra.flux_analysis.geometric
- cobra.flux_analysis.helpers
- cobra.flux_analysis.loopless
- cobra.flux_analysis.moma
- cobra.flux_analysis.parsimonious
- cobra.flux_analysis.phenotype_phase_plane
- cobra.flux_analysis.reaction
- cobra.flux_analysis.room
- cobra.flux_analysis.variability
- cobra.io
- cobra.manipulation.annotate
- cobra.manipulation.delete
- cobra.manipulation.modify
- cobra.manipulation.validate
- cobra.medium.annotations
- cobra.medium.boundary_types
- cobra.medium.minimal_medium
- cobra.sampling
- cobra.test
- cobra.test.conftest
- cobra.test.test_core.conftest
- cobra.test.test_core.test_configuration
- cobra.test.test_core.test_core_reaction
- cobra.test.test_core.test_dictlist
- cobra.test.test_core.test_gene
- cobra.test.test_core.test_group
- cobra.test.test_core.test_metabolite
- cobra.test.test_core.test_model
- cobra.test.test_core.test_solution
- cobra.test.test_core.test_summary
- cobra.test.test_core.test_summary.test_metabolite_summary
- cobra.test.test_core.test_summary.test_model_summary
- cobra.test.test_core.test_summary.test_reaction_summary
- cobra.test.test_io.conftest
- cobra.test.test_io.test_annotation
- cobra.test.test_io.test_annotation_format
- cobra.test.test_io.test_io_order
- cobra.test.test_io.test_json
- cobra.test.test_io.test_mat
- cobra.test.test_io.test_notes
- cobra.test.test_io.test_pickle
- cobra.test.test_io.test_sbml
- cobra.test.test_io.test_yaml
- cobra.test.test_manipulation
- cobra.test.test_medium
- cobra.util
- conftest
- test_achr
- test_array
- test_deletion
- test_fastcc
- test_gapfilling
- test_geometric
- test_loopless
- test_moma
- test_optgp
- test_parsimonious
- test_phenotype_phase_plane
- test_reaction
- test_room
- test_sampling
- test_solver
- test_util
- test_variability
- update_pickles