17.1.1.8.1.3.1.12. cobra.test.test_flux_analysis.test_variability

Test functionalities of Flux Variability Analysis.

17.1.1.8.1.3.1.12.1. Module Contents

17.1.1.8.1.3.1.12.1.1. Functions

test_flux_variability_benchmark(large_model, benchmark, all_solvers)

Benchmark FVA.

test_pfba_flux_variability(model, pfba_fva_results, fva_results, all_solvers)

Test FVA using pFBA.

test_loopless_pfba_fva(model)

test_flux_variability(model, fva_results, all_solvers)

Test FVA.

test_parallel_flux_variability(model, fva_results, all_solvers)

Test parallel FVA.

test_flux_variability_loopless_benchmark(model, benchmark, all_solvers)

Benchmark loopless FVA.

test_flux_variability_loopless(model, all_solvers)

Test loopless FVA.

test_fva_data_frame(model)

Test DataFrame obtained from FVA.

test_fva_infeasible(model)

Test FVA infeasibility.

test_fva_minimization(model)

Test minimization using FVA.

test_find_blocked_reactions_solver_none(model)

Test find_blocked_reactions() [no specific solver].

test_essential_genes(model)

Test find_essential_genes().

test_essential_reactions(model)

Test find_blocked_reactions().

test_find_blocked_reactions(model, all_solvers)

Test find_blocked_reactions().
cobra.test.test_flux_analysis.test_variability.test_flux_variability_benchmark(large_model, benchmark, all_solvers)[source]

Benchmark FVA.

cobra.test.test_flux_analysis.test_variability.test_pfba_flux_variability(model, pfba_fva_results, fva_results, all_solvers)[source]

Test FVA using pFBA.

cobra.test.test_flux_analysis.test_variability.test_loopless_pfba_fva(model)[source]
cobra.test.test_flux_analysis.test_variability.test_flux_variability(model, fva_results, all_solvers)[source]

Test FVA.

cobra.test.test_flux_analysis.test_variability.test_parallel_flux_variability(model, fva_results, all_solvers)[source]

Test parallel FVA.

cobra.test.test_flux_analysis.test_variability.test_flux_variability_loopless_benchmark(model, benchmark, all_solvers)[source]

Benchmark loopless FVA.

cobra.test.test_flux_analysis.test_variability.test_flux_variability_loopless(model, all_solvers)[source]

Test loopless FVA.

cobra.test.test_flux_analysis.test_variability.test_fva_data_frame(model)[source]

Test DataFrame obtained from FVA.

cobra.test.test_flux_analysis.test_variability.test_fva_infeasible(model)[source]

Test FVA infeasibility.

cobra.test.test_flux_analysis.test_variability.test_fva_minimization(model)[source]

Test minimization using FVA.

cobra.test.test_flux_analysis.test_variability.test_find_blocked_reactions_solver_none(model)[source]

Test find_blocked_reactions() [no specific solver].

cobra.test.test_flux_analysis.test_variability.test_essential_genes(model)[source]

Test find_essential_genes().

cobra.test.test_flux_analysis.test_variability.test_essential_reactions(model)[source]

Test find_blocked_reactions().

cobra.test.test_flux_analysis.test_variability.test_find_blocked_reactions(model, all_solvers)[source]

Test find_blocked_reactions().