Documentation for COBRApy¶
For installation instructions, please see INSTALL.rst.
Many of the examples below are viewable as IPython notebooks, which can be viewed at nbviewer.
- 1. Global Configuration
- 2. Building a Model
- 3. Reading and Writing Models
- 4. Simulating with FBA
- 5. Simulating Deletions
- 6. Production envelopes
- 7. Flux sampling
- 8. Loopless FBA
- 9. Consistency testing
- 10. Gapfillling
- 11. Growth media
- 12. Solvers
- 13. Tailored constraints, variables and objectives
- 14. Dynamic Flux Balance Analysis (dFBA) in COBRApy
- 15. Using the COBRA toolbox with cobrapy
- 16. FAQ
- 17. API Reference