17.1.1.8.1.3.1.3. `cobra.test.test_flux_analysis.test_fastcc`¶

Test functionalities of FASTCC.

17.1.1.8.1.3.1.3.1. Module Contents¶

`figure1_model`()	Generate a toy model as described in 1 figure 1.
`opposing_model`()	Generate a toy model with opposing reversible reactions.
`test_fastcc_benchmark`(model, benchmark, all_solvers)	Benchmark fastcc.
`test_figure1`(figure1_model, all_solvers)	Test fastcc.
`test_opposing`(opposing_model, all_solvers)	Test fastcc.
`test_fastcc_against_fva_nonblocked_rxns`(model, all_solvers)	Test non-blocked reactions obtained by FASTCC against FVA.

cobra.test.test_flux_analysis.test_fastcc.figure1_model()[source]¶

Generate a toy model as described in 1 figure 1.

References

1(1,2): Vlassis N, Pacheco MP, Sauter T (2014) Fast Reconstruction of Compact Context-Specific Metabolic Network Models. PLoS Comput Biol 10(1): e1003424. doi:10.1371/journal.pcbi.1003424

cobra.test.test_flux_analysis.test_fastcc.opposing_model()[source]¶

Generate a toy model with opposing reversible reactions.

This toy model ensures that two opposing reversible reactions do not appear as blocked.

cobra.test.test_flux_analysis.test_fastcc.test_fastcc_benchmark(model, benchmark, all_solvers)[source]¶: Benchmark fastcc.

cobra.test.test_flux_analysis.test_fastcc.test_figure1(figure1_model, all_solvers)[source]¶: Test fastcc.

cobra.test.test_flux_analysis.test_fastcc.test_opposing(opposing_model, all_solvers)[source]¶: Test fastcc.

cobra.test.test_flux_analysis.test_fastcc.test_fastcc_against_fva_nonblocked_rxns(model, all_solvers)[source]¶: Test non-blocked reactions obtained by FASTCC against FVA.