15.1.1.6.1.7. cobra.test.test_model

15.1.1.6.1.7.1. Module Contents

class cobra.test.test_model.TestReactions

test_gpr()

test_gpr_modification(model)

test_gene_knock_out(model)

test_str()

test_add_metabolite_benchmark(model, benchmark, solver)

test_add_metabolite(model)

test_subtract_metabolite_benchmark(model, benchmark, solver)

test_subtract_metabolite(model, solver)

test_mass_balance(model)

test_build_from_string(model)

test_bounds_setter(model)

test_copy(model)

test_iadd(model)

test_add(model)

test_radd(model)

test_mul(model)

test_sub(model)

test_repr_html_(model)

class cobra.test.test_model.TestCobraMetabolites

test_metabolite_formula()

test_formula_element_setting(model)

test_repr_html_(model)

class cobra.test.test_model.TestCobraGenes

test_repr_html_(model)

class cobra.test.test_model.TestCobraModel

test core cobra functions

test_add_remove_reaction_benchmark(model, benchmark, solver)

test_add_metabolite(model)

test_remove_metabolite_subtractive(model)

test_remove_metabolite_destructive(model)

test_compartments(model)

test_add_reaction(model)

test_add_reaction_context(model)

test_add_reaction_from_other_model(model)

test_model_remove_reaction(model)

test_reaction_remove(model)

test_reaction_delete(model)

test_remove_gene(model)

test_exchange_reactions(model)

test_add_boundary(model, metabolites, reaction_type, prefix)

test_add_boundary_context(model, metabolites, reaction_type, prefix)

test_add_existing_boundary(model, metabolites, reaction_type)

test_copy_benchmark(model, solver, benchmark)

test_copy_benchmark_large_model(large_model, solver, benchmark)

test_copy(model)

modifying copy should not modify the original

test_deepcopy_benchmark(model, benchmark)

test_deepcopy(model)

Reference structures are maintained when deepcopying

test_add_reaction_orphans(model)

test reaction addition

Need to verify that no orphan genes or metabolites are contained in reactions after adding them to the model.

test_merge_models(model, tiny_toy_model)

test_change_objective_benchmark(model, benchmark, solver)

test_get_objective_direction(model)

test_set_objective_direction(model)

test_slim_optimize(model)

test_optimize(model, solver)

test_change_objective(model)

test_problem_properties(model)

test_solution_data_frame(model)

test_context_manager(model)

test_repr_html_(model)

class cobra.test.test_model.TestStoichiometricMatrix

Test the simple replacement for ArrayBasedModel

test_dense_matrix(model)

test_sparse_matrix(model)