15.1.1.6.1.7. cobra.test.test_model
¶
15.1.1.6.1.7.1. Module Contents¶
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class
cobra.test.test_model.
TestReactions
¶ -
test_gpr
()¶
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test_gpr_modification
(model)¶
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test_gene_knock_out
(model)¶
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test_str
()¶
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test_add_metabolite_benchmark
(model, benchmark, solver)¶
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test_add_metabolite
(model)¶
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test_subtract_metabolite_benchmark
(model, benchmark, solver)¶
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test_subtract_metabolite
(model, solver)¶
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test_mass_balance
(model)¶
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test_build_from_string
(model)¶
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test_bounds_setter
(model)¶
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test_copy
(model)¶
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test_iadd
(model)¶
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test_add
(model)¶
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test_radd
(model)¶
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test_mul
(model)¶
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test_sub
(model)¶
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test_repr_html_
(model)¶
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class
cobra.test.test_model.
TestCobraMetabolites
¶ -
test_metabolite_formula
()¶
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test_formula_element_setting
(model)¶
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test_repr_html_
(model)¶
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class
cobra.test.test_model.
TestCobraModel
¶ test core cobra functions
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test_add_remove_reaction_benchmark
(model, benchmark, solver)¶
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test_add_metabolite
(model)¶
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test_remove_metabolite_subtractive
(model)¶
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test_remove_metabolite_destructive
(model)¶
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test_compartments
(model)¶
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test_add_reaction
(model)¶
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test_add_reaction_context
(model)¶
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test_add_reaction_from_other_model
(model)¶
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test_model_remove_reaction
(model)¶
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test_reaction_remove
(model)¶
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test_reaction_delete
(model)¶
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test_remove_gene
(model)¶
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test_exchange_reactions
(model)¶
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test_add_boundary
(model, metabolites, reaction_type, prefix)¶
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test_add_boundary_context
(model, metabolites, reaction_type, prefix)¶
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test_add_existing_boundary
(model, metabolites, reaction_type)¶
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test_copy_benchmark
(model, solver, benchmark)¶
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test_copy_benchmark_large_model
(large_model, solver, benchmark)¶
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test_copy
(model)¶ modifying copy should not modify the original
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test_deepcopy_benchmark
(model, benchmark)¶
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test_deepcopy
(model)¶ Reference structures are maintained when deepcopying
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test_add_reaction_orphans
(model)¶ test reaction addition
Need to verify that no orphan genes or metabolites are contained in reactions after adding them to the model.
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test_merge_models
(model, tiny_toy_model)¶
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test_change_objective_benchmark
(model, benchmark, solver)¶
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test_get_objective_direction
(model)¶
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test_set_objective_direction
(model)¶
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test_slim_optimize
(model)¶
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test_optimize
(model, solver)¶
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test_change_objective
(model)¶
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test_problem_properties
(model)¶
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test_solution_data_frame
(model)¶
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test_context_manager
(model)¶
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test_repr_html_
(model)¶
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