15.1.1.3.1.5. cobra.io.sbml3
¶
15.1.1.3.1.5.1. Module Contents¶
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class
cobra.io.sbml3.
Basic
¶
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cobra.io.sbml3.
extract_rdf_annotation
(sbml_element, metaid)¶
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cobra.io.sbml3.
clip
(string, prefix)[source]¶ clips a prefix from the beginning of a string if it exists
>>> clip("R_pgi", "R_") "pgi"
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cobra.io.sbml3.
validate_sbml_model
(filename, check_model=True)[source]¶ Returns the model along with a list of errors.
Parameters: Returns: - model (
Model
object) – The cobra model if the file could be read succesfully or None otherwise. - errors (dict) – Warnings and errors grouped by their respective types.
Raises: CobraSBMLError
– If the file is not a valid SBML Level 3 file with FBC.- model (