15.1.1.3.1.2. cobra.io.json
¶
15.1.1.3.1.2.1. Module Contents¶
-
cobra.io.json.
to_json
(model, sort=False, **kwargs)[source]¶ Return the model as a JSON document.
kwargs
are passed on tojson.dumps
.Parameters: - model (cobra.Model) – The cobra model to represent.
- sort (bool, optional) – Whether to sort the metabolites, reactions, and genes or maintain the order defined in the model.
Returns: String representation of the cobra model as a JSON document.
Return type: See also
save_json_model()
- Write directly to a file.
json.dumps()
- Base function.
-
cobra.io.json.
from_json
(document)[source]¶ Load a cobra model from a JSON document.
Parameters: document (str) – The JSON document representation of a cobra model. Returns: The cobra model as represented in the JSON document. Return type: cobra.Model See also
load_json_model()
- Load directly from a file.
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cobra.io.json.
save_json_model
(model, filename, sort=False, pretty=False, **kwargs)[source]¶ Write the cobra model to a file in JSON format.
kwargs
are passed on tojson.dump
.Parameters: - model (cobra.Model) – The cobra model to represent.
- filename (str or file-like) – File path or descriptor that the JSON representation should be written to.
- sort (bool, optional) – Whether to sort the metabolites, reactions, and genes or maintain the order defined in the model.
- pretty (bool, optional) – Whether to format the JSON more compactly (default) or in a more
verbose but easier to read fashion. Can be partially overwritten by the
kwargs
.
See also
to_json()
- Return a string representation.
json.dump()
- Base function.
-
cobra.io.json.
load_json_model
(filename)[source]¶ Load a cobra model from a file in JSON format.
Parameters: filename (str or file-like) – File path or descriptor that contains the JSON document describing the cobra model. Returns: The cobra model as represented in the JSON document. Return type: cobra.Model See also
from_json()
- Load from a string.