17.19. test_fastcc

Test functionalities of FASTCC.

17.19.1. Module Contents

17.19.1.1. Functions

figure1_model()

Generate a toy model as described in 1 figure 1.

opposing_model()

Generate a toy model with opposing reversible reactions.

test_fastcc_benchmark(model, benchmark, all_solvers)

Benchmark fastcc.

test_figure1(figure1_model, all_solvers)

Test fastcc.

test_opposing(opposing_model, all_solvers)

Test fastcc.

test_fastcc_against_fva_nonblocked_rxns(model, all_solvers)

Test non-blocked reactions obtained by FASTCC against FVA.

test_fastcc.figure1_model()[source]

Generate a toy model as described in 1 figure 1.

References

1(1,2)

Vlassis N, Pacheco MP, Sauter T (2014) Fast Reconstruction of Compact Context-Specific Metabolic Network Models. PLoS Comput Biol 10(1): e1003424. doi:10.1371/journal.pcbi.1003424

test_fastcc.opposing_model()[source]

Generate a toy model with opposing reversible reactions.

This toy model ensures that two opposing reversible reactions do not appear as blocked.

test_fastcc.test_fastcc_benchmark(model, benchmark, all_solvers)[source]

Benchmark fastcc.

test_fastcc.test_figure1(figure1_model, all_solvers)[source]

Test fastcc.

test_fastcc.test_opposing(opposing_model, all_solvers)[source]

Test fastcc.

test_fastcc.test_fastcc_against_fva_nonblocked_rxns(model, all_solvers)[source]

Test non-blocked reactions obtained by FASTCC against FVA.