17.23. test_deletion

Test functionalities of reaction and gene deletions.

17.23.1. Module Contents

17.23.1.1. Functions

test_single_gene_deletion_fba_benchmark(model, benchmark, all_solvers)

Benchmark single gene deletion using FBA.

test_single_gene_deletion_fba(model, all_solvers)

Test single gene deletion using FBA.

test_single_gene_deletion_moma_benchmark(model, benchmark, qp_solvers)

Benchmark single gene deletion using MOMA.

test_single_gene_deletion_moma(model, qp_solvers)

Test single gene deletion using MOMA.

test_single_gene_deletion_moma_reference(model, qp_solvers)

Test single gene deletion using MOMA (reference solution).

test_single_gene_deletion_linear_moma_benchmark(model, benchmark, all_solvers)

Benchmark single gene deletion using linear MOMA.

test_single_gene_deletion_linear_moma(model, all_solvers)

Test single gene deletion using linear MOMA (reference solution).

test_single_gene_deletion_room_benchmark(model, benchmark, all_solvers)

Benchmark single gene deletion using ROOM.

test_single_gene_deletion_linear_room_benchmark(model, benchmark, all_solvers)

Benchmark single gene deletion using linear ROOM.

test_single_reaction_deletion_benchmark(model, benchmark, all_solvers)

Benchmark single reaction deletion.

test_single_reaction_deletion(model, all_solvers)

Test single reaction deletion.

test_single_reaction_deletion_room(room_model, room_solution, all_solvers)

Test single reaction deletion using ROOM.

test_single_reaction_deletion_linear_room(room_model, room_solution, all_solvers)

Test single reaction deletion using linear ROOM.

test_double_gene_deletion_benchmark(large_model, benchmark)

Benchmark double gene deletion.

test_double_gene_deletion(model)

Test double gene deletion.

test_double_reaction_deletion_benchmark(large_model, benchmark)

Benchmark double reaction deletion.

test_double_reaction_deletion(model)

Test double reaction deletion.

test_deletion_accessor(small_model)

Test the DataFrame accessor.

test_deletion.test_single_gene_deletion_fba_benchmark(model, benchmark, all_solvers)[source]

Benchmark single gene deletion using FBA.

test_deletion.test_single_gene_deletion_fba(model, all_solvers)[source]

Test single gene deletion using FBA.

test_deletion.test_single_gene_deletion_moma_benchmark(model, benchmark, qp_solvers)[source]

Benchmark single gene deletion using MOMA.

test_deletion.test_single_gene_deletion_moma(model, qp_solvers)[source]

Test single gene deletion using MOMA.

test_deletion.test_single_gene_deletion_moma_reference(model, qp_solvers)[source]

Test single gene deletion using MOMA (reference solution).

test_deletion.test_single_gene_deletion_linear_moma_benchmark(model, benchmark, all_solvers)[source]

Benchmark single gene deletion using linear MOMA.

test_deletion.test_single_gene_deletion_linear_moma(model, all_solvers)[source]

Test single gene deletion using linear MOMA (reference solution).

test_deletion.test_single_gene_deletion_room_benchmark(model, benchmark, all_solvers)[source]

Benchmark single gene deletion using ROOM.

test_deletion.test_single_gene_deletion_linear_room_benchmark(model, benchmark, all_solvers)[source]

Benchmark single gene deletion using linear ROOM.

test_deletion.test_single_reaction_deletion_benchmark(model, benchmark, all_solvers)[source]

Benchmark single reaction deletion.

test_deletion.test_single_reaction_deletion(model, all_solvers)[source]

Test single reaction deletion.

test_deletion.test_single_reaction_deletion_room(room_model, room_solution, all_solvers)[source]

Test single reaction deletion using ROOM.

test_deletion.test_single_reaction_deletion_linear_room(room_model, room_solution, all_solvers)[source]

Test single reaction deletion using linear ROOM.

test_deletion.test_double_gene_deletion_benchmark(large_model, benchmark)[source]

Benchmark double gene deletion.

test_deletion.test_double_gene_deletion(model)[source]

Test double gene deletion.

test_deletion.test_double_reaction_deletion_benchmark(large_model, benchmark)[source]

Benchmark double reaction deletion.

test_deletion.test_double_reaction_deletion(model)[source]

Test double reaction deletion.

test_deletion.test_deletion_accessor(small_model)[source]

Test the DataFrame accessor.