cobra
latest
  • 1. Getting Started
  • 2. Global Configuration
  • 3. Building a Model
  • 4. Reading and Writing Models
  • 5. Simulating with FBA
  • 6. Simulating Deletions
  • 7. Production envelopes
  • 8. Flux sampling
  • 9. Loopless FBA
  • 10. Consistency testing
  • 11. Gapfillling
  • 12. Growth media
  • 13. Solvers
  • 14. Tailored constraints, variables and objectives
  • 15. Dynamic Flux Balance Analysis (dFBA) in COBRApy
  • 16. FAQ
  • 17. API
cobra
  • Docs »
  • Overview: module code

All modules for which code is available

  • cobra
    • cobra.core.configuration
    • cobra.core.dictlist
    • cobra.core.formula
    • cobra.core.gene
    • cobra.core.group
    • cobra.core.metabolite
    • cobra.core.model
    • cobra.core.object
    • cobra.core.reaction
    • cobra.core.singleton
    • cobra.core.solution
    • cobra.core.species
    • cobra.exceptions
    • cobra.flux_analysis.deletion
    • cobra.flux_analysis.fastcc
    • cobra.flux_analysis.gapfilling
    • cobra.flux_analysis.geometric
    • cobra.flux_analysis.helpers
    • cobra.flux_analysis.loopless
    • cobra.flux_analysis.moma
    • cobra.flux_analysis.parsimonious
    • cobra.flux_analysis.phenotype_phase_plane
    • cobra.flux_analysis.reaction
    • cobra.flux_analysis.room
    • cobra.flux_analysis.variability
    • cobra.io.dict
    • cobra.io.json
    • cobra.io.mat
    • cobra.io.sbml
    • cobra.io.web.abstract_model_repository
    • cobra.io.web.bigg_models_repository
    • cobra.io.web.biomodels_repository
    • cobra.io.web.cobrapy_repository
    • cobra.io.web.load
    • cobra.io.yaml
    • cobra.manipulation.annotate
    • cobra.manipulation.delete
    • cobra.manipulation.modify
    • cobra.manipulation.validate
    • cobra.medium.annotations
    • cobra.medium.boundary_types
    • cobra.medium.minimal_medium
    • cobra.sampling.achr
    • cobra.sampling.core
    • cobra.sampling.hr_sampler
    • cobra.sampling.optgp
    • cobra.sampling.sampling
    • cobra.summary.metabolite_summary
    • cobra.summary.model_summary
    • cobra.summary.reaction_summary
    • cobra.summary.summary
    • cobra.util.array
    • cobra.util.context
    • cobra.util.process_pool
    • cobra.util.solver
    • cobra.util.util

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