cobra.io.web.abstract_model_repository

Provide an abstract base class that describes a remote model repository.

Classes

AbstractModelRepository

Define an abstract base class that describes a remote model repository.

Module Contents

class cobra.io.web.abstract_model_repository.AbstractModelRepository(*, url: httpx.URL | str, **kwargs)

Bases: abc.ABC

Define an abstract base class that describes a remote model repository.

name

The name of the remote repository.

Type:

str

_progress

name: str = 'Abstract'

_url

property url: httpx.URL

Return the repository’s URL.

abstractmethod get_sbml(model_id: str) → bytes

Attempt to download an SBML document from the repository.

Parameters:

model_id (str) – The identifier of the desired metabolic model. This is typically repository specific.

Returns:

A gzip-compressed, UTF-8 encoded SBML document.

Return type:

bytes