Documentation for COBRApy¶
For installation instructions, please see INSTALL.rst.
Many of the examples below are viewable as IPython notebooks, which can be viewed at nbviewer.
- 1. Getting Started
- 2. Global Configuration
- 3. Building a Model
- 4. Reading and Writing Models
- 5. Simulating with FBA
- 6. Simulating Deletions
- 7. Production envelopes
- 8. Flux sampling
- 9. Loopless FBA
- 10. Consistency testing
- 11. Gapfillling
- 12. Growth media
- 13. Solvers
- 14. Tailored constraints, variables and objectives
- 15. Dynamic Flux Balance Analysis (dFBA) in COBRApy
- 16. FAQ
- 17. API