cobra.manipulation.validate
¶
Provide functions for model component validations.
Module Contents¶
Functions¶
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Check mass balance for reactions of model and return unbalanced ones. |
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Check metabolite formulae of model. |
Attributes¶
- cobra.manipulation.validate.check_mass_balance(model: cobra.Model) Dict[cobra.Reaction, Dict[cobra.Metabolite, float]] [source]¶
Check mass balance for reactions of model and return unbalanced ones.
- Parameters
model (cobra.Model) – The model to perform check on.
- Returns
dict of {cobra.Reaction – Returns an empty dict if all components are balanced.
- Return type
dict of {cobra.Metabolite: float}}
- cobra.manipulation.validate.check_metabolite_compartment_formula(model: cobra.Model) List[str] [source]¶
Check metabolite formulae of model.
- Parameters
model (cobra.Model) – The model to perform check on.
- Returns
Returns an empty list if no errors are found.
- Return type