17.8. test_variability

Test functionalities of Flux Variability Analysis.

17.8.1. Module Contents

17.8.1.1. Functions

test_flux_variability_benchmark(large_model: Model, benchmark: Callable, all_solvers: List[str]) → None	Benchmark FVA.
test_pfba_flux_variability(model: Model, pfba_fva_results: pd.DataFrame, fva_results: pd.DataFrame, all_solvers: List[str]) → None	Test FVA using pFBA.
test_loopless_pfba_fva(model: Model) → None	Test loopless FVA using pFBA.
test_flux_variability(model: Model, fva_results: pd.DataFrame, all_solvers: List[str]) → None	Test FVA.
test_parallel_flux_variability(model: Model, fva_results: pd.DataFrame, all_solvers: List[str]) → None	Test parallel FVA.
test_flux_variability_loopless_benchmark(model: Model, benchmark: Callable, all_solvers: List[str]) → None	Benchmark loopless FVA.
test_flux_variability_loopless(model: Model, all_solvers: List[str]) → None	Test loopless FVA.
test_fva_data_frame(model: Model) → None	Test DataFrame obtained from FVA.
test_fva_infeasible(model: Model) → None	Test FVA infeasibility.
test_fva_minimization(model: Model) → None	Test minimization using FVA.
test_find_blocked_reactions_solver_none(model: Model) → None	Test find_blocked_reactions() [no specific solver].
test_essential_genes(model: Model) → None	Test find_essential_genes().
test_essential_reactions(model: Model) → None	Test find_blocked_reactions().
test_find_blocked_reactions(model: Model, all_solvers: List[str]) → None	Test find_blocked_reactions().

test_variability.test_flux_variability_benchmark(large_model: Model, benchmark: Callable, all_solvers: List[str]) → None

Benchmark FVA.

test_variability.test_pfba_flux_variability(model: Model, pfba_fva_results: pd.DataFrame, fva_results: pd.DataFrame, all_solvers: List[str]) → None

Test FVA using pFBA.

test_variability.test_loopless_pfba_fva(model: Model) → None

Test loopless FVA using pFBA.

test_variability.test_flux_variability(model: Model, fva_results: pd.DataFrame, all_solvers: List[str]) → None

Test FVA.

test_variability.test_parallel_flux_variability(model: Model, fva_results: pd.DataFrame, all_solvers: List[str]) → None

Test parallel FVA.

test_variability.test_flux_variability_loopless_benchmark(model: Model, benchmark: Callable, all_solvers: List[str]) → None

Benchmark loopless FVA.

test_variability.test_flux_variability_loopless(model: Model, all_solvers: List[str]) → None

Test loopless FVA.

test_variability.test_fva_data_frame(model: Model) → None

Test DataFrame obtained from FVA.

test_variability.test_fva_infeasible(model: Model) → None

Test FVA infeasibility.

test_variability.test_fva_minimization(model: Model) → None

Test minimization using FVA.

test_variability.test_find_blocked_reactions_solver_none(model: Model) → None

Test find_blocked_reactions() [no specific solver].

test_variability.test_essential_genes(model: Model) → None

Test find_essential_genes().

test_variability.test_essential_reactions(model: Model) → None

Test find_blocked_reactions().

test_variability.test_find_blocked_reactions(model: Model, all_solvers: List[str]) → None

Test find_blocked_reactions().