17.13. test_deletion
¶
Test functionalities of reaction and gene deletions.
17.13.1. Module Contents¶
17.13.1.1. Functions¶
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Benchmark single gene deletion using FBA. |
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Test single gene deletion using FBA. |
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Benchmark single gene deletion using MOMA. |
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Test single gene deletion using MOMA. |
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Test single gene deletion using MOMA (reference solution). |
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Benchmark single gene deletion using linear MOMA. |
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Test single gene deletion using linear MOMA (reference solution). |
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Benchmark single gene deletion using ROOM. |
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Benchmark single gene deletion using linear ROOM. |
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Benchmark single reaction deletion. |
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Test single reaction deletion. |
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Test single reaction deletion using ROOM. |
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Test single reaction deletion using linear ROOM. |
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Benchmark double gene deletion. |
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Test double gene deletion. |
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Test that the bug reported in #1102 is fixed. |
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Benchmark double reaction deletion. |
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Test double reaction deletion. |
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Test the DataFrame accessor. |
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test_deletion.
test_single_gene_deletion_fba_benchmark
(model: Model, benchmark: Callable, all_solvers: List[str]) → None[source]¶ Benchmark single gene deletion using FBA.
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test_deletion.
test_single_gene_deletion_fba
(model: Model, all_solvers: List[str]) → None[source]¶ Test single gene deletion using FBA.
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test_deletion.
test_single_gene_deletion_moma_benchmark
(model: Model, benchmark: Callable, qp_solvers: List[str]) → None[source]¶ Benchmark single gene deletion using MOMA.
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test_deletion.
test_single_gene_deletion_moma
(model: Model, qp_solvers: List[str]) → None[source]¶ Test single gene deletion using MOMA.
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test_deletion.
test_single_gene_deletion_moma_reference
(model: Model, qp_solvers: List[str]) → None[source]¶ Test single gene deletion using MOMA (reference solution).
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test_deletion.
test_single_gene_deletion_linear_moma_benchmark
(model: Model, benchmark: Callable, all_solvers: List[str]) → None[source]¶ Benchmark single gene deletion using linear MOMA.
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test_deletion.
test_single_gene_deletion_linear_moma
(model: Model, all_solvers: List[str]) → None[source]¶ Test single gene deletion using linear MOMA (reference solution).
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test_deletion.
test_single_gene_deletion_room_benchmark
(model: Model, benchmark: Callable, all_solvers: List[str]) → None[source]¶ Benchmark single gene deletion using ROOM.
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test_deletion.
test_single_gene_deletion_linear_room_benchmark
(model: Model, benchmark: Callable, all_solvers: List[str]) → None[source]¶ Benchmark single gene deletion using linear ROOM.
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test_deletion.
test_single_reaction_deletion_benchmark
(model: Model, benchmark: Callable, all_solvers: List[str]) → None[source]¶ Benchmark single reaction deletion.
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test_deletion.
test_single_reaction_deletion
(model: Model, all_solvers) → None[source]¶ Test single reaction deletion.
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test_deletion.
test_single_reaction_deletion_room
(room_model: Model, room_solution: Solution, all_solvers: List[str]) → None[source]¶ Test single reaction deletion using ROOM.
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test_deletion.
test_single_reaction_deletion_linear_room
(room_model: Model, room_solution: Solution, all_solvers: List[str]) → None[source]¶ Test single reaction deletion using linear ROOM.
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test_deletion.
test_double_gene_deletion_benchmark
(large_model: Model, benchmark: Callable) → None[source]¶ Benchmark double gene deletion.
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test_deletion.
test_double_gene_knockout_bug
(large_model: Model) → None[source]¶ Test that the bug reported in #1102 is fixed.
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test_deletion.
test_double_reaction_deletion_benchmark
(large_model: Model, benchmark: Callable) → None[source]¶ Benchmark double reaction deletion.