17.1.1.8.1.1.1.2. cobra.test.test_manipulation.test_delete

Test functionalities of model component pruning functions.

17.1.1.8.1.1.1.2.1. Module Contents

17.1.1.8.1.1.1.2.1.1. Functions

test_prune_unused_metabolites_output_type(model: Model) → None	Test the output type of unused metabolites pruning.
test_prune_unused_metabolites_sanity(model: Model) → None	Test the sanity of unused metabolites pruning.
test_prune_unused_reactions_output_type(model: Model) → None	Test the output type of unused reactions pruning.
test_prune_unused_rxns_functionality(model: Model) → None	Test the sanity of unused reactions pruning.
_find_gene_knockout_reactions_fast(m: Model, gene_list: List[Gene]) → List[Reaction]	Quickly find gene knockout reactions.
_get_removed(m: Model) → Set[str]	Get trimmed reactions.
_gene_knockout_computation(m: Model, gene_ids: List[str], expected_reaction_ids: List[str]) → None	Compute gene knockout.
test_gene_knockout(salmonella: Model) → None	Test gene knockout.
test_remove_genes() → None	Test gene removal.

cobra.test.test_manipulation.test_delete.test_prune_unused_metabolites_output_type(model: Model) → None

Test the output type of unused metabolites pruning.

cobra.test.test_manipulation.test_delete.test_prune_unused_metabolites_sanity(model: Model) → None

Test the sanity of unused metabolites pruning.

cobra.test.test_manipulation.test_delete.test_prune_unused_reactions_output_type(model: Model) → None

Test the output type of unused reactions pruning.

cobra.test.test_manipulation.test_delete.test_prune_unused_rxns_functionality(model: Model) → None

Test the sanity of unused reactions pruning.

cobra.test.test_manipulation.test_delete._find_gene_knockout_reactions_fast(m: Model, gene_list: List[Gene]) → List[Reaction]

Quickly find gene knockout reactions.

cobra.test.test_manipulation.test_delete._get_removed(m: Model) → Set[str]

Get trimmed reactions.

cobra.test.test_manipulation.test_delete._gene_knockout_computation(m: Model, gene_ids: List[str], expected_reaction_ids: List[str]) → None

Compute gene knockout.

cobra.test.test_manipulation.test_delete.test_gene_knockout(salmonella: Model) → None

Test gene knockout.

cobra.test.test_manipulation.test_delete.test_remove_genes() → None

Test gene removal.