17.8. test_fastcc

Test functionalities of FASTCC.

17.8.1. Module Contents

17.8.1.1. Functions

figure1_model() → Model	Generate a toy model as described in 1 figure 1.
opposing_model() → Model	Generate a toy model with opposing reversible reactions.
test_fastcc_benchmark(model: Model, benchmark, all_solvers) → None	Benchmark fastcc.
test_figure1(figure1_model: Model, all_solvers) → None	Test FASTCC.
test_opposing(opposing_model: Model, all_solvers) → None	Test FASTCC.
test_fastcc_against_fva_nonblocked_rxns(model: Model, all_solvers) → None	Test non-blocked reactions obtained by FASTCC against FVA.

test_fastcc.figure1_model() → Model

Generate a toy model as described in 1 figure 1.

References

1(1,2)

Vlassis N, Pacheco MP, Sauter T (2014) Fast Reconstruction of Compact Context-Specific Metabolic Network Models. PLoS Comput Biol 10(1): e1003424. doi:10.1371/journal.pcbi.1003424

test_fastcc.opposing_model() → Model

Generate a toy model with opposing reversible reactions.

This toy model ensures that two opposing reversible reactions do not appear as blocked.

test_fastcc.test_fastcc_benchmark(model: Model, benchmark, all_solvers) → None

Benchmark fastcc.

test_fastcc.test_figure1(figure1_model: Model, all_solvers) → None

Test FASTCC.

test_fastcc.test_opposing(opposing_model: Model, all_solvers) → None

Test FASTCC.

test_fastcc.test_fastcc_against_fva_nonblocked_rxns(model: Model, all_solvers) → None

Test non-blocked reactions obtained by FASTCC against FVA.