17.12. test_deletion

Test functionalities of reaction and gene deletions.

17.12.1. Module Contents

17.12.1.1. Functions

test_single_gene_deletion_fba_benchmark(model, benchmark, all_solvers)	Benchmark single gene deletion using FBA.
test_single_gene_deletion_fba(model, all_solvers)	Test single gene deletion using FBA.
test_single_gene_deletion_moma_benchmark(model, benchmark, qp_solvers)	Benchmark single gene deletion using MOMA.
test_single_gene_deletion_moma(model, qp_solvers)	Test single gene deletion using MOMA.
test_single_gene_deletion_moma_reference(model, qp_solvers)	Test single gene deletion using MOMA (reference solution).
test_single_gene_deletion_linear_moma_benchmark(model, benchmark, all_solvers)	Benchmark single gene deletion using linear MOMA.
test_single_gene_deletion_linear_moma(model, all_solvers)	Test single gene deletion using linear MOMA (reference solution).
test_single_gene_deletion_room_benchmark(model, benchmark, all_solvers)	Benchmark single gene deletion using ROOM.
test_single_gene_deletion_linear_room_benchmark(model, benchmark, all_solvers)	Benchmark single gene deletion using linear ROOM.
test_single_reaction_deletion_benchmark(model, benchmark, all_solvers)	Benchmark single reaction deletion.
test_single_reaction_deletion(model, all_solvers)	Test single reaction deletion.
test_single_reaction_deletion_room(room_model, room_solution, all_solvers)	Test single reaction deletion using ROOM.
test_single_reaction_deletion_linear_room(room_model, room_solution, all_solvers)	Test single reaction deletion using linear ROOM.
test_double_gene_deletion_benchmark(large_model, benchmark)	Benchmark double gene deletion.
test_double_gene_deletion(model)	Test double gene deletion.
test_double_gene_knockout_bug(large_model)	Test that the bug reported in #1102 is fixed.
test_double_reaction_deletion_benchmark(large_model, benchmark)	Benchmark double reaction deletion.
test_double_reaction_deletion(model)	Test double reaction deletion.
test_deletion_accessor(small_model)	Test the DataFrame accessor.

test_deletion.test_single_gene_deletion_fba_benchmark(model, benchmark, all_solvers)

Benchmark single gene deletion using FBA.

test_deletion.test_single_gene_deletion_fba(model, all_solvers)

Test single gene deletion using FBA.

test_deletion.test_single_gene_deletion_moma_benchmark(model, benchmark, qp_solvers)

Benchmark single gene deletion using MOMA.

test_deletion.test_single_gene_deletion_moma(model, qp_solvers)

Test single gene deletion using MOMA.

test_deletion.test_single_gene_deletion_moma_reference(model, qp_solvers)

Test single gene deletion using MOMA (reference solution).

test_deletion.test_single_gene_deletion_linear_moma_benchmark(model, benchmark, all_solvers)

Benchmark single gene deletion using linear MOMA.

test_deletion.test_single_gene_deletion_linear_moma(model, all_solvers)

Test single gene deletion using linear MOMA (reference solution).

test_deletion.test_single_gene_deletion_room_benchmark(model, benchmark, all_solvers)

Benchmark single gene deletion using ROOM.

test_deletion.test_single_gene_deletion_linear_room_benchmark(model, benchmark, all_solvers)

Benchmark single gene deletion using linear ROOM.

test_deletion.test_single_reaction_deletion_benchmark(model, benchmark, all_solvers)

Benchmark single reaction deletion.

test_deletion.test_single_reaction_deletion(model, all_solvers)

Test single reaction deletion.

test_deletion.test_single_reaction_deletion_room(room_model, room_solution, all_solvers)

Test single reaction deletion using ROOM.

test_deletion.test_single_reaction_deletion_linear_room(room_model, room_solution, all_solvers)

Test single reaction deletion using linear ROOM.

test_deletion.test_double_gene_deletion_benchmark(large_model, benchmark)

Benchmark double gene deletion.

test_deletion.test_double_gene_deletion(model)

Test double gene deletion.

test_deletion.test_double_gene_knockout_bug(large_model)

Test that the bug reported in #1102 is fixed.

test_deletion.test_double_reaction_deletion_benchmark(large_model, benchmark)

Benchmark double reaction deletion.

test_deletion.test_double_reaction_deletion(model)

Test double reaction deletion.

test_deletion.test_deletion_accessor(small_model)

Test the DataFrame accessor.