17.1.1.4.1.4. cobra.manipulation.validate¶
Provide functions for model component validations.
17.1.1.4.1.4.1. Module Contents¶
17.1.1.4.1.4.1.1. Functions¶
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Check mass balance for reactions of model and return unbalanced ones. |
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Check metabolite formulae of model. |
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cobra.manipulation.validate.check_mass_balance(model: Model) → Dict['Reaction', Dict['Metabolite', float]][source]¶ Check mass balance for reactions of model and return unbalanced ones.
- Parameters
model (cobra.Model) – The model to perform check on.
- Returns
dict of {cobra.Reaction – Returns an empty dict if all components are balanced.
- Return type
dict of {cobra.Metabolite: float}}
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cobra.manipulation.validate.check_metabolite_compartment_formula(model: Model) → List[str][source]¶ Check metabolite formulae of model.
- Parameters
model (cobra.Model) – The model to perform check on.
- Returns
Returns an empty list if no errors are found.
- Return type
list of str