17.7. test_variability

Test functionalities of Flux Variability Analysis.

17.7.1. Module Contents

17.7.1.1. Functions

test_flux_variability_benchmark(large_model, benchmark, all_solvers)	Benchmark FVA.
test_pfba_flux_variability(model, pfba_fva_results, fva_results, all_solvers)	Test FVA using pFBA.
test_loopless_pfba_fva(model)
test_flux_variability(model, fva_results, all_solvers)	Test FVA.
test_parallel_flux_variability(model, fva_results, all_solvers)	Test parallel FVA.
test_flux_variability_loopless_benchmark(model, benchmark, all_solvers)	Benchmark loopless FVA.
test_flux_variability_loopless(model, all_solvers)	Test loopless FVA.
test_fva_data_frame(model)	Test DataFrame obtained from FVA.
test_fva_infeasible(model)	Test FVA infeasibility.
test_fva_minimization(model)	Test minimization using FVA.
test_find_blocked_reactions_solver_none(model)	Test find_blocked_reactions() [no specific solver].
test_essential_genes(model)	Test find_essential_genes().
test_essential_reactions(model)	Test find_blocked_reactions().
test_find_blocked_reactions(model, all_solvers)	Test find_blocked_reactions().

test_variability.test_flux_variability_benchmark(large_model, benchmark, all_solvers)

Benchmark FVA.

test_variability.test_pfba_flux_variability(model, pfba_fva_results, fva_results, all_solvers)

Test FVA using pFBA.

test_variability.test_loopless_pfba_fva(model)

test_variability.test_flux_variability(model, fva_results, all_solvers)

Test FVA.

test_variability.test_parallel_flux_variability(model, fva_results, all_solvers)

Test parallel FVA.

test_variability.test_flux_variability_loopless_benchmark(model, benchmark, all_solvers)

Benchmark loopless FVA.

test_variability.test_flux_variability_loopless(model, all_solvers)

Test loopless FVA.

test_variability.test_fva_data_frame(model)

Test DataFrame obtained from FVA.

test_variability.test_fva_infeasible(model)

Test FVA infeasibility.

test_variability.test_fva_minimization(model)

Test minimization using FVA.

test_variability.test_find_blocked_reactions_solver_none(model)

Test find_blocked_reactions() [no specific solver].

test_variability.test_essential_genes(model)

Test find_essential_genes().

test_variability.test_essential_reactions(model)

Test find_blocked_reactions().

test_variability.test_find_blocked_reactions(model, all_solvers)

Test find_blocked_reactions().