17.12. test_deletion
¶
Test functionalities of reaction and gene deletions.
17.12.1. Module Contents¶
17.12.1.1. Functions¶
|
Benchmark single gene deletion using FBA. |
|
Test single gene deletion using FBA. |
|
Benchmark single gene deletion using MOMA. |
|
Test single gene deletion using MOMA. |
|
Test single gene deletion using MOMA (reference solution). |
|
Benchmark single gene deletion using linear MOMA. |
|
Test single gene deletion using linear MOMA (reference solution). |
|
Benchmark single gene deletion using ROOM. |
|
Benchmark single gene deletion using linear ROOM. |
|
Benchmark single reaction deletion. |
|
Test single reaction deletion. |
|
Test single reaction deletion using ROOM. |
|
Test single reaction deletion using linear ROOM. |
|
Benchmark double gene deletion. |
|
Test double gene deletion. |
|
Benchmark double reaction deletion. |
Test double reaction deletion. |
|
|
Test the DataFrame accessor. |
-
test_deletion.
test_single_gene_deletion_fba_benchmark
(model, benchmark, all_solvers)[source]¶ Benchmark single gene deletion using FBA.
-
test_deletion.
test_single_gene_deletion_fba
(model, all_solvers)[source]¶ Test single gene deletion using FBA.
-
test_deletion.
test_single_gene_deletion_moma_benchmark
(model, benchmark, qp_solvers)[source]¶ Benchmark single gene deletion using MOMA.
-
test_deletion.
test_single_gene_deletion_moma
(model, qp_solvers)[source]¶ Test single gene deletion using MOMA.
-
test_deletion.
test_single_gene_deletion_moma_reference
(model, qp_solvers)[source]¶ Test single gene deletion using MOMA (reference solution).
-
test_deletion.
test_single_gene_deletion_linear_moma_benchmark
(model, benchmark, all_solvers)[source]¶ Benchmark single gene deletion using linear MOMA.
-
test_deletion.
test_single_gene_deletion_linear_moma
(model, all_solvers)[source]¶ Test single gene deletion using linear MOMA (reference solution).
-
test_deletion.
test_single_gene_deletion_room_benchmark
(model, benchmark, all_solvers)[source]¶ Benchmark single gene deletion using ROOM.
-
test_deletion.
test_single_gene_deletion_linear_room_benchmark
(model, benchmark, all_solvers)[source]¶ Benchmark single gene deletion using linear ROOM.
-
test_deletion.
test_single_reaction_deletion_benchmark
(model, benchmark, all_solvers)[source]¶ Benchmark single reaction deletion.
-
test_deletion.
test_single_reaction_deletion
(model, all_solvers)[source]¶ Test single reaction deletion.
-
test_deletion.
test_single_reaction_deletion_room
(room_model, room_solution, all_solvers)[source]¶ Test single reaction deletion using ROOM.
-
test_deletion.
test_single_reaction_deletion_linear_room
(room_model, room_solution, all_solvers)[source]¶ Test single reaction deletion using linear ROOM.
-
test_deletion.
test_double_gene_deletion_benchmark
(large_model, benchmark)[source]¶ Benchmark double gene deletion.