17.1.1.7.1.2.1.9. cobra.test.test_io.test_sbml
¶
Testing SBML functionality based on libsbml.
17.1.1.7.1.2.1.9.1. Module Contents¶
17.1.1.7.1.2.1.9.1.1. Classes¶
Tests the read and write functions. |
17.1.1.7.1.2.1.9.1.2. Functions¶
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Test validation function. |
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Test reading and writing to file handle. |
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Test reading from SBML string. |
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Testing reading and writing of ModelHistory. |
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Testing reading and writing of groups |
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Test validation function. |
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Test the validation warnings. |
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Test infinity bound example. |
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Test infinity bound example. |
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Test that GPRs are written and read correctly |
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Test that NOTES in the RECON 2.2 style are written and read correctly |
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cobra.test.test_io.test_sbml.
test_validate
(trial, data_directory)[source]¶ Test validation function.
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cobra.test.test_io.test_sbml.
test_filehandle
(data_directory, tmp_path)[source]¶ Test reading and writing to file handle.
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cobra.test.test_io.test_sbml.
test_from_sbml_string
(data_directory)[source]¶ Test reading from SBML string.
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cobra.test.test_io.test_sbml.
test_model_history
(tmp_path)[source]¶ Testing reading and writing of ModelHistory.
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cobra.test.test_io.test_sbml.
test_groups
(data_directory, tmp_path)[source]¶ Testing reading and writing of groups
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cobra.test.test_io.test_sbml.
test_validate
(data_directory)[source] Test the validation code.
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cobra.test.test_io.test_sbml.
test_validation_warnings
(data_directory)[source]¶ Test the validation warnings.
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cobra.test.test_io.test_sbml.
test_infinity_bounds
(data_directory, tmp_path)[source]¶ Test infinity bound example.
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cobra.test.test_io.test_sbml.
test_boundary_conditions
(data_directory)[source]¶ Test infinity bound example.