17.1.1.1.2.12. cobra.core.species

17.1.1.1.2.12.1. Module Contents

17.1.1.1.2.12.1.1. Classes

Species

Species is a class for holding information regarding

class cobra.core.species.Species(id=None, name=None)[source]

Bases: cobra.core.object.Object

Species is a class for holding information regarding a chemical Species

Parameters
  • id (string) – An identifier for the chemical species

  • name (string) – A human readable name.

property reactions(self)[source]
__getstate__(self)[source]

Remove the references to container reactions when serializing to avoid problems associated with recursion.

copy(self)[source]

When copying a reaction, it is necessary to deepcopy the components so the list references aren’t carried over.

Additionally, a copy of a reaction is no longer in a cobra.Model.

This should be fixed with self.__deepcopy__ if possible

property model(self)[source]