{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Flux sampling" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Basic usage" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "The easiest way to get started with flux sampling is using the `sample` function in the `flux_analysis` submodule. `sample` takes at least two arguments: a cobra model and the number of samples you want to generate." ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Scaling...\n", " A: min|aij| = 1.000e+00 max|aij| = 1.000e+00 ratio = 1.000e+00\n", "Problem data seem to be well scaled\n" ] }, { "data": { "text/html": [ "
\n", " | ACALD | \n", "ACALDt | \n", "ACKr | \n", "ACONTa | \n", "ACONTb | \n", "ACt2r | \n", "ADK1 | \n", "AKGDH | \n", "AKGt2r | \n", "ALCD2x | \n", "... | \n", "RPI | \n", "SUCCt2_2 | \n", "SUCCt3 | \n", "SUCDi | \n", "SUCOAS | \n", "TALA | \n", "THD2 | \n", "TKT1 | \n", "TKT2 | \n", "TPI | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | \n", "-0.771296 | \n", "-0.431093 | \n", "-2.284246 | \n", "6.735302 | \n", "6.735302 | \n", "-2.284246 | \n", "2.273930 | \n", "3.942050 | \n", "-1.589360 | \n", "-0.340203 | \n", "... | \n", "-2.314416 | \n", "6.997002 | \n", "8.082133 | \n", "335.977726 | \n", "-3.942050 | \n", "2.152983 | \n", "12.850348 | \n", "2.152983 | \n", "2.088065 | \n", "7.542984 | \n", "
1 | \n", "-2.089680 | \n", "-1.099843 | \n", "-0.386453 | \n", "10.477790 | \n", "10.477790 | \n", "-0.386453 | \n", "3.396770 | \n", "3.163168 | \n", "-1.592767 | \n", "-0.989837 | \n", "... | \n", "-1.756359 | \n", "3.093051 | \n", "3.415053 | \n", "540.804734 | \n", "-3.163168 | \n", "1.657479 | \n", "56.649368 | \n", "1.657479 | \n", "1.617715 | \n", "8.029587 | \n", "
2 | \n", "-1.108346 | \n", "-0.126460 | \n", "-1.198639 | \n", "5.057819 | \n", "5.057819 | \n", "-1.198639 | \n", "7.154043 | \n", "0.313155 | \n", "-0.227554 | \n", "-0.981886 | \n", "... | \n", "-4.491355 | \n", "7.873466 | \n", "8.606818 | \n", "558.331088 | \n", "-0.313155 | \n", "4.295540 | \n", "12.141283 | \n", "4.295540 | \n", "4.216795 | \n", "5.181243 | \n", "
3 | \n", "-1.239111 | \n", "-0.334024 | \n", "-1.284023 | \n", "12.035499 | \n", "12.035499 | \n", "-1.284023 | \n", "19.790232 | \n", "1.359155 | \n", "-0.007846 | \n", "-0.905088 | \n", "... | \n", "-2.063827 | \n", "9.002800 | \n", "10.772472 | \n", "647.037371 | \n", "-1.359155 | \n", "2.016495 | \n", "26.609381 | \n", "2.016495 | \n", "1.997461 | \n", "7.712080 | \n", "
4 | \n", "-1.943290 | \n", "-1.571257 | \n", "-0.842072 | \n", "11.035900 | \n", "11.035900 | \n", "-0.842072 | \n", "15.963163 | \n", "0.288986 | \n", "-0.861444 | \n", "-0.372033 | \n", "... | \n", "-1.468256 | \n", "7.188997 | \n", "8.085781 | \n", "368.039875 | \n", "-0.288986 | \n", "1.465663 | \n", "5.730886 | \n", "1.465663 | \n", "1.464620 | \n", "8.298285 | \n", "
5 rows × 95 columns
\n", "